Adplot: detection and visualization of repetitive patterns in complete genomes
نویسندگان
چکیده
منابع مشابه
Adplot: detection and visualization of repetitive patterns in complete genomes
MOTIVATION Repetitive DNA sequences are abundant in genomes and efficient mining of significant repeats is important as the first step of repetitive sequence research. Although many computational tools for the purpose, either automatic or visualization ones, have been developed, detection and analysis of approximate repeats are still non-trivial task. RESULTS Auto Dot PLOT (Adplot), a dotplot...
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Computation and Visualization of Degenerate Repeats in Complete Genomes
The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The REPuter family of programs described herein was designed to serve as a fundamental tool in such studies. Efficient and complete detection of various types of repeats is provided together with an evaluati...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2004
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btg470